So I am going to try to do this now.
I will prepare a Powerpoint file with the pictures in there and send it to Ian and Suliman for comment.
Starting about 14:15.
Cleaning the combined data frame for a heat map:
useful command is subset
> keep <- subset(cleanboth, select = -Pat_12)
This removes the data from Patient 12
> keep <- subset(keep, select = Accession)
Just leaves the Accession column...
> x <-keep[complete.cases(keep), ]
Focusses on just the samples with no missing values.
Sadly on 189 observation.
Now 15:54.
Managed to do lots of stuff but didn't manage to produce heatmap.
It thinks the data.frame is NOT numeric so it won't allow me to make the heatmap.
Try again later.
A few pages of data to send to Suliman for some feedback.
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