Tuesday, 11 September 2018

Drawing bodies, brains and protein structures...

Bodies

ggplot for bodies with expression data...
https://twitter.com/JesperMaag/status/1038914309957607424

https://github.com/jespermaag/gganatogram

https://github.com/ebi-gene-expression-group/anatomogram


Semantic Body Illustrations 
https://github.com/flekschas/sbi
https://academic.oup.com/bioinformatics/article/31/5/794/2748201
http://sbb.cellfinder.org/human-adult-female-body

Brains

https://github.com/LCBC-UiO/ggseg
https://github.com/LCBC-UiO/ggseg/wiki/Creating-and-contributing-atlases



https://rud.is/b/2016/02/11/plot-the-new-svg-r-logo-with-ggplot2/

Most importantly:
https://github.com/davidmcclure/svg-to-wkt
Convert SVG into text....


https://drmowinckels.io/blog/adding-external-images-to-plots/



And then proteins too...

http://thegrantlab.org/bio3d/index.php

Bio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

https://www.rcsb.org/3d-view/1AYC




But still SVG to data.frame to plot...
I don't know the way!
https://github.com/davidmcclure/svg-to-wkt - maybe!

Info here: https://github.com/LCBC-UiO/ggseg/wiki/Creating-and-contributing-atlases


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