The workflow involved:
- Writing text and code in RMarkdown using R Studio
- Using BiocWorkflowTools (https://www.bioconductor.org/packages/release/bioc/html/BiocWorkflowTools.html)
- Putting in citations from Bibdesk
- Knitting with knitr in R Studio which creates multiple files...
- A PDF
- A tex file
- A folder of latex figures (names not ideal, I think).
- Uploading files to Overleaf
- Logging into F1000Research
- Linking into Overleaf
- The uploading a Word file too (separate Rmd file and Knit required and some manual editing - WHY?)
- Adding cover letter
- Identifying referees - finding emails can be difficult!
A busy day of work...
Here are a few of the resources I used to help write the manuscript:
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