Getting a human body silhouette in svg format...

Well Wikipedia is clearly a good option...

Various types available...

https://commons.wikimedia.org/wiki/File:Human_body_silhouette.svg
https://commons.wikimedia.org/wiki/File:Female_shadow.svg
https://commons.wikimedia.org/wiki/Category:SVG_human_body_features
https://commons.wikimedia.org/wiki/Category:Diagrams_of_the_human_body_features
https://commons.wikimedia.org/wiki/Category:Diagrams_of_the_human_anatomy
https://commons.wikimedia.org/wiki/Category:Diagrams_of_organs_of_the_human_body




R packages
https://cran.r-project.org/web/packages/rcorpora/rcorpora.pdf
has a body part list: https://github.com/dariusk/corpora/blob/master/data/humans/bodyParts.json

R Shiny app
https://sidderb.wordpress.com/2013/01/30/a-shiny-app-to-display-the-human-body-map-dataset/


Websearch reveals these questions:
https://stackoverflow.com/questions/10670751/r-plot-human-body-in-2d

https://stackoverflow.com/questions/28664798/how-to-make-a-heat-map-in-r-based-on-a-gif-of-the-human-body

https://stackoverflow.com/questions/4993189/overlay-data-onto-background-image

https://stackoverflow.com/questions/16409935/plot-data-over-background-image-with-ggplot/16418186#16418186

https://stackoverflow.com/questions/24839363/how-to-use-more-than-6-shapes-in-ggplot

development packages page for Bioconductor

So here is the development packages page for Bioconductor

http://bioconductor.org/packages/devel/bioc/

I guess drawProteins should be here soon...

I think this code should install development version from Bioconductor when it's there:

install.packages("drawProteins",
 repos = "http://www.bioconductor.org/packages/devel/bioc",
     type  = "source")

I will check back and test it in a few days...

N.B. Will it work?

For the development version on github:

Merging a branch using git desktop...

learning from here: https://git-scm.com/book/en/v2/Git-Branching-Basic-Branching-and-Merging
Seems to make sense to update devel branch from master first...

This worked.

Also both master and devel branch pass build on Travis - GOOD!


Now try to merge branch....

https://www.attosol.com/create-and-merge-branches-using-github-desktop-client/

tells us to Create a Pull Request

Then:
Compare
Update
Sync

Not doing this but I should...

https://www.bioconductor.org/developers/how-to/useDevel/

Addressing comments from Bioconductor...

A few relatively minor comments:

"Looks good. Just a couple of comments -

1. LazyData: true
   Any particular reason why you're setting this to 'true'? I ask because we've seen this cause problems (long delays) when loading packages with substantial data. My recommendation would be to leave this as 'False'.
2. Both httr and ggplot2 are imported in DESCRIPTION. They should be selectively or fully imported in the NAMESPACE."

from: https://github.com/Bioconductor/Contributions/issues/541

Changing LazyData: false means adding data() functions before each command in examples as mentioned here: http://kbroman.org/pkg_primer/pages/data.html

No good reason not to do this so - DONE. 

Using the Roxygen tags to @import ggplot2 and @import httr at the appropriate times changes the NAMESPACE in the appropriate way. 

Advice here:

• http://r-pkgs.had.co.nz/namespace.html
• https://cran.r-project.org/web/packages/roxygen2/vignettes/namespace.html
• https://stackoverflow.com/questions/8597993/does-roxygen2-automatically-write-namespace-directives-for-imports-packages

Once, I worked out how to do this - DONE. 

So basically all done - testing and version bumping required.