Tuesday, 27 June 2017

Plan to extend drawProteins to draw multiple proteins (and testing)....

Challenges to think about in terms of drawing multiple proteins 

So test case:
Draw three rel A family members:

(do we want one data.table for each or all three combined? but then we have a name for each protein)...

Need to arrange names on left (default) - option on right or space more?

Divide window vertically by three (number of proteins)..
Scale y axis to longest
Conserve colour of domains - how.

Other ideas:

  • add a custom domain 
  • Add other PTMs, conflicts, etc....
  • Change plotting so domains are slightly wider than chain. 
  • Colour chain... 
  • Scale by area not length...



N.B. What about p105? Two isoforms? How does my API handle this?
TEST/investigate

N.B. Better to focus on improving minimal deliverable unit rather than getting into interactions at this time, I think...



For testing - have some data within github - within package
For example a JSON object...
Transform it into a data.table
Check that they are the same....

Can I get a plot object and check that?

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