Wednesday, 15 July 2015

Using R to get abstracts from Pubmed...

This package called pubmed.mine looks interesting:
http://cran.r-project.org/web/packages/pubmed.mineR/pubmed.mineR.pdf

So does this package RISmed:
http://cran.r-project.org/web/packages/RISmed/RISmed.pdf

There is a script here:
http://davetang.org/muse/2013/10/31/querying-pubmed-using-r/

https://freshbiostats.wordpress.com/2013/12/03/analysis-of-pubmed-search-results-using-r/

Lots to think about.

There is also a package called scholar which gets some citation data from Google....

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